GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences
GSNAP: Genomic Short-read Nucleotide Alignment Program
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References:
- Thomas D. Wu and Colin K. Watanabe. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 2005 21: 1859-1875. [Abstract] [Full Text]
- Thomas D. Wu and Serban Nacu. Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics 2010 26: 873-881. [Abstract] [Full Text]