#NEXUS [co1.nex -- data title] [Name: Cow Len: 705 Check: D79BA70B] [Name: Carp Len: 705 Check: 2145AD33] [Name: Chicken Len: 705 Check: 182E15B9] [Name: Human Len: 705 Check: C171911A] [Name: Loach Len: 705 Check: 473B8B89] [Name: Mouse Len: 705 Check: A6AC25CA] [Name: Rat Len: 705 Check: 9B5CED12] [Name: Seal Len: 705 Check: 3520DA4D] [Name: Whale Len: 705 Check: 51E885FF] [Name: Frog Len: 705 Check: E0D81169] begin data; dimensions ntax=10 nchar=705; format datatype=dna interleave missing=-; matrix Cow ATGGCATATCCCATACAACT AGGATTCCAAGATGCAACAT CACCAATCATAGAAGAACTA CTTCACTTTCATGACCACAC GCTAATAATTGTCTTCTTAA Carp ATGGCACACCCAACGCAACT AGGTTTCAAGGACGCGGCCA TACCCGTTATAGAGGAACTT CTTCACTTCCACGACCACGC ATTAATAATTGTGCTCCTAA Chicken ATGGCCAACCACTCCCAACT AGGCTTTCAAGACGCCTCAT CCCCCATCATAGAAGAGCTC GTTGAATTCCACGACCACGC CCTGATAGTCGCACTAGCAA Human ATGGCACATGCAGCGCAAGT AGGTCTACAAGACGCTACTT CCCCTATCATAGAAGAGCTT ATCACCTTTCATGATCACGC CCTCATAATCATTTTCCTTA Loach ATGGCACATCCCACACAATT AGGATTCCAAGACGCGGCCT CACCCGTAATAGAAGAACTT CTTCACTTCCATGACCATGC CCTAATAATTGTATTTTTGA Mouse ATGGCCTACCCATTCCAACT TGGTCTACAAGACGCCACAT CCCCTATTATAGAAGAGCTA ATAAATTTCCATGATCACAC ACTAATAATTGTTTTCCTAA Rat ATGGCTTACCCATTTCAACT TGGCTTACAAGACGCTACAT CACCTATCATAGAAGAACTT ACAAACTTTCATGACCACAC CCTAATAATTGTATTCCTCA Seal ATGGCATACCCCCTACAAAT AGGCCTACAAGATGCAACCT CTCCCATTATAGAGGAGTTA CTACACTTCCATGACCACAC ATTAATAATTGTGTTCCTAA Whale ATGGCATATCCATTCCAACT AGGTTTCCAAGATGCAGCAT CACCCATCATAGAAGAGCTC CTACACTTTCACGATCATAC ACTAATAATCGTTTTTCTAA Frog ATGGCACACCCATCACAATT AGGTTTTCAAGACGCAGCCT CTCCAATTATAGAAGAATTA CTTCACTTCCACGACCATAC CCTCATAGCCGTTTTTCTTA Cow TTAGCTCATTAGTACTTTAC ATTATTTCACTAATACTAAC GACAAAGCTGACCCATACAA GCACGATAGATGCACAAGAA GTAGAGACAATCTGAACCAT Carp TTAGCACTTTAGTTTTATAT ATTATTACTGCAATGGTATC AACTAAACTTACTAATAAAT ATATTCTAGACTCCCAAGAA ATCGAAATCGTATGAACCAT Chicken TTTGCAGCTTAGTACTCTAC CTTCTAACTCTTATACTTAT AGAAAAACTATCA---TCAA ACACCGTAGATGCCCAAGAA GTTGAACTAATCTGAACCAT Human TCTGCTTCCTAGTCCTGTAT GCCCTTTTCCTAACACTCAC AACAAAACTAACTAATACTA ACATCTCAGACGCTCAGGAA ATAGAAACCGTCTGAACTAT Loach TTAGCGCCCTAGTACTTTAT GTTATTATTACAACCGTCTC AACAAAACTCACTAACATAT ATATTTTGGACTCACAAGAA ATTGAAATCGTATGAACTGT Mouse TTAGCTCCTTAGTCCTCTAT ATCATCTCGCTAATATTAAC AACAAAACTAACACATACAA GCACAATAGATGCACAAGAA GTTGAAACCATTTGAACTAT Rat TCAGCTCCCTAGTACTTTAT ATTATTTCACTAATACTAAC AACAAAACTAACACACACAA GCACAATAGACGCCCAAGAA GTAGAAACAATTTGAACAAT Seal TTAGCTCATTAGTACTCTAC ATTATCTCACTTATACTAAC CACGAAACTCACCCACACAA GTACAATAGACGCACAAGAA GTGGAAACGGTGTGAACGAT Whale TTAGCTCTTTAGTTCTCTAC ATTATTACCCTAATGCTTAC AACCAAATTAACACATACTA GTACAATAGACGCCCAAGAA GTAGAAACTGTCTGAACTAT Frog TTAGTACGCTAGTTCTTTAC ATTATTACTATTATAATAAC TACTAAACTAACTAATACAA ACCTAATGGACGCACAAGAG ATCGAAATAGTGTGAACTAT Cow TCTGCCCGCCATCATCTTAA TTCTAATTGCTCTTCCTTCT TTACGAATTCTATACATAAT AGATGAAATCAATAACCCAT CTCTTACAGTAAAAACCATA Carp TCTACCAGCCGTCATTTTAG TACTAATCGCCCTGCCCTCC CTACGCATCCTGTACCTTAT AGACGAAATTAACGACCCTC ACCTGACAATTAAAGCAATA Chicken CCTACCCGCTATTGTCCTAG TCCTGCTTGCCCTCCCCTCC CTCCAAATCCTCTACATAAT AGACGAAATCGACGAACCTG ATCTCACCCTAAAAGCCATC Human CCTGCCCGCCATCATCCTAG TCCTCATCGCCCTCCCATCC CTACGCATCCTTTACATAAC AGACGAGGTCAACGATCCCT CCCTTACCATCAAATCAATT Loach GCTCCCTGCCCTAATCCTCA TTTTAATCGCCCTCCCCTCA CTACGAATTCTATATCTTAT AGACGAGATTAATGACCCCC ACCTAACAATTAAGGCCATG Mouse TCTACCAGCTGTAATCCTTA TCATAATTGCTCTCCCCTCT CTACGCATTCTATATATAAT AGACGAAATCAACAACCCCG TATTAACCGTTAAAACCATA Rat TCTCCCAGCTGTCATTCTTA TTCTAATTGCCCTTCCCTCC CTACGAATTCTATACATAAT AGACGAGATTAATAACCCAG TTCTAACAGTAAAAACTATA Seal CCTACCCGCTATCATTTTAA TTCTCATTGCCCTACCATCA TTACGAATCCTCTACATAAT GGACGAGATCAATAACCCTT CCTTGACCGTAAAAACTATA Whale CCTCCCAGCCATTATCTTAA TTTTAATTGCCTTGCCTTCA TTACGGATCCTTTACATAAT AGACGAAGTCAATAACCCCT CCCTCACTGTAAAAACAATA Frog TATACCAGCTATTAGCCTCA TCATAATTGCCCTTCCATCC CTTCGTATCCTATATTTAAT AGATGAAGTTAATGATCCAC ACTTAACAATTAAAGCAATC Cow GGACATCAGTGATACTGAAG CTATGAGTATACAGATTATG AGGACTTAAGCTTCGACTCC TACATAATTCCAACATCAGA ATTAAAGCCAGGGGAGCTAC Carp GGACACCAATGATACTGAAG TTACGAGTATACAGACTATG AAAATCTAGGATTCGACTCC TATATAGTACCAACCCAAGA CCTTGCCCCCGGACAATTCC Chicken GGACACCAATGATACTGAAC CTATGAATACACAGACTTCA AGGACCTCTCATTTGACTCC TACATAACCCCAACAACAGA CCTCCCCCTAGGCCACTTCC Human GGCCACCAATGGTACTGAAC CTACGAGTACACCGACTACG GCGGACTAATCTTCAACTCC TACATACTTCCCCCATTATT CCTAGAACCAGGCGACCTGC Loach GGGCACCAATGATACTGAAG CTACGAGTATACTGATTATG AAAACTTAAGTTTTGACTCC TACATAATCCCCACCCAGGA CCTAACCCCTGGACAATTCC Mouse GGGCACCAATGATACTGAAG CTACGAATATACTGACTATG AAGACCTATGCTTTGATTCA TATATAATCCCAACAAACGA CCTAAAACCTGGTGAACTAC Rat GGACACCAATGATACTGAAG CTATGAATATACTGACTATG AAGACCTATGCTTTGACTCC TACATAATCCCAACCAATGA CCTAAAACCAGGTGAACTTC Seal GGACATCAGTGATACTGAAG CTATGAGTACACAGACTACG AAGACCTGAACTTTGACTCA TATATGATCCCCACACAAGA ACTAAAGCCCGGAGAACTAC Whale GGTCACCAATGATATTGAAG CTATGAGTATACCGACTACG AAGACCTAAGCTTCGACTCC TATATAATCCCAACATCAGA CCTAAAGCCAGGAGAACTAC Frog GGCCACCAATGATACTGAAG CTACGAATATACTAACTATG AGGATCTCTCATTTGACTCT TATATAATTCCAACTAATGA CCTTACCCCTGGACAATTCC Cow GACTATTAGAAGTCGATAAT CGAGTTGTACTACCAATAGA AATAACAATCCGAATGTTAG TCTCCTCTGAAGACGTATTA CACTCATGAGCTGTGCCCTC Carp GACTTCTGGAAACAGACCAC CGAATAGTTGTTCCAATAGA ATCCCCAGTCCGTGTCCTAG TATCTGCTGAAGACGTGCTA CATTCTTGAGCTGTTCCATC Chicken GCCTACTAGAAGTCGACCAT CGCATTGTAATCCCCATAGA ATCCCCCATTCGAGTAATCA TCACCGCTGATGACGTCCTC CACTCATGAGCCGTACCCGC Human GACTCCTTGACGTTGACAAT CGAGTAGTACTCCCGATTGA AGCCCCCATTCGTATAATAA TTACATCACAAGACGTCTTG CACTCATGAGCTGTCCCCAC Loach GGCTACTAGAGACAGACCAC CGAATGGTTGTTCCCATAGA ATCCCCTATTCGCATTCTTG TTTCCGCCGAAGATGTACTA CACTCCTGGGCCCTTCCAGC Mouse GACTGCTAGAAGTTGATAAC CGAGTCGTTCTGCCAATAGA ACTTCCAATCCGTATATTAA TTTCATCTGAAGACGTCCTC CACTCATGAGCAGTCCCCTC Rat GTCTATTAGAAGTTGATAAT CGGGTAGTCTTACCAATAGA ACTTCCAATTCGTATACTAA TCTCATCCGAAGACGTCCTG CACTCATGAGCCATCCCTTC Seal GACTGCTAGAAGTAGACAAT CGAGTAGTCCTCCCAATAGA AATAACAATCCGCATACTAA TCTCATCAGAAGATGTACTC CACTCATGAGCCGTACCGTC Whale GATTATTAGAAGTAGATAAC CGAGTTGTCTTACCTATAGA AATAACAATCCGAATATTAG TCTCATCAGAAGACGTACTC CACTCATGGGCCGTACCCTC Frog GGCTGCTAGAAGTTGATAAT CGAATAGTAGTCCCAATAGA ATCTCCAACCCGACTTTTAG TTACAGCCGAAGACGTCCTC CACTCGTGAGCTGTACCCTC Cow TCTAGGACTAAAAACAGACG CAATCCCAGGCCGTCTAAAC CAAACAACCCTTATATCGTC CCGTCCAGGCTTATATTACG GTCAATGCTCAGAAATTTGC Carp CCTTGGCGTAAAAATGGACG CAGTCCCAGGACGACTAAAT CAAGCCGCCTTTATTGCCTC ACGCCCAGGGGTCTTTTACG GACAATGCTCTGAAATTTGT Chicken CCTCGGGGTAAAAACAGACG CAATCCCTGGACGACTAAAT CAAACCTCCTTCATCACCAC TCGACCAGGAGTGTTTTACG GACAATGCTCAGAAATCTGC Human ATTAGGCTTAAAAACAGATG CAATTCCCGGACGTCTAAAC CAAACCACTTTCACCGCTAC ACGACCGGGGGTATACTACG GTCAATGCTCTGAAATCTGT Loach CATGGGGGTAAAGATAGACG CGGTCCCAGGACGCCTTAAC CAAACCGCCTTTATTGCCTC CCGCCCCGGGGTATTCTATG GGCAATGCTCAGAAATCTGT Mouse CCTAGGACTTAAAACTGATG CCATCCCAGGCCGACTAAAT CAAGCAACAGTAACATCAAA CCGACCAGGGTTATTCTATG GCCAATGCTCTGAAATTTGT Rat ACTAGGGTTAAAAACCGACG CAATCCCCGGCCGCCTAAAC CAAGCTACAGTCACATCAAA CCGACCAGGTCTATTCTATG GCCAATGCTCTGAAATTTGC Seal CCTAGGACTAAAAACTGATG CTATCCCAGGACGACTAAAC CAAACAACCCTAATAACCAT ACGACCAGGACTGTACTACG GTCAATGCTCAGAAATCTGT Whale CTTGGGCCTAAAAACAGATG CAATCCCAGGACGCCTAAAC CAAACAACCTTAATATCAAC ACGACCAGGCCTATTTTATG GACAATGCTCAGAGATCTGC Frog CTTGGGTGTCAAAACAGATG CAATCCCAGGACGACTTCAT CAAACATCATTTATTGCTAC TCGTCCGGGAGTATTTTACG GACAATGTTCAGAAATTTGC Cow GGGTCAAACCACAGTTTCAT ACCCATTGTCCTTGAGTTAG TCCCACTAAAGTACTTTGAA AAATGATCTGCGTCAATATT A------------------- Carp GGAGCTAATCACAGCTTTAT ACCAATTGTAGTTGAAGCAG TACCTCTCGAACACTTCGAA AACTGATCCTCATTAATACT AGAAGACGCCTCGCTAGGAA Chicken GGAGCTAACCACAGCTACAT ACCCATTGTAGTAGAGTCTA CCCCCCTAAAACACTTTGAA GCCTGATCCTCACTA----- -------------CTGTCAT Human GGAGCAAACCACAGTTTCAT GCCCATCGTCCTAGAATTAA TTCCCCTAAAAATCTTTGAA ATA----------------- ----GGGCCCGTATTTACCC Loach GGAGCAAACCACAGCTTTAT ACCCATCGTAGTAGAAGCGG TCCCACTATCTCACTTCGAA AACTGGTCCACCCTTATACT AAAAGACGCCTCACTAGGAA Mouse GGATCTAACCATAGCTTTAT GCCCATTGTCCTAGAAATGG TTCCACTAAAATATTTCGAA AACTGATCTGCTTCAATAAT T------------------- Rat GGCTCAAATCACAGCTTCAT ACCCATTGTACTAGAAATAG TGCCTCTAAAATATTTCGAA AACTGATCAGCTTCTATAAT T------------------- Seal GGTTCAAACCACAGCTTCAT ACCTATTGTCCTCGAATTGG TCCCACTATCCCACTTCGAG AAATGATCTACCTCAATGCT T------------------- Whale GGCTCAAACCACAGTTTCAT ACCAATTGTCCTAGAACTAG TACCCCTAGAAGTCTTTGAA AAATGATCTGTATCAATACT A------------------- Frog GGAGCAAACCACAGCTTTAT ACCAATTGTAGTTGAAGCAG TACCGCTAACCGACTTTGAA AACTGATCTTCATCAATACT A---GAAGCATCACTA---- Cow --TAA Carp GCTAA Chicken CTTAA Human TATAG Loach GCTAA Mouse --TAA Rat --TAA Seal --TAA Whale --TAA Frog --AGA ; end; begin mrbayes; charset 1st_pos = 1-705\3; charset 2nd_pos = 2-705\3; charset 3rd_pos = 3-705\3; partition bycodon = 3:1st_pos,2nd_pos,3rd_pos; set partition=bycodon; prset applyto=(all) ratepr=dirichlet(1,1,1); lset applyto=(all) nst=2; mcmcp ngen=10000 printfreq=100 samplefreq=10 nchains=4; report tree=brlens; end;