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ReadSeq is a reformatting program for DNA and protein sequence data
developed by Don Gilbert. It allows the input of single or multiple
sequences in 18 different formats and converts them to a specified
format.
Input data file formats
AceDB, Clustal, DNAStrider, EMBL, FASTA, FlatFeat, Genbank, GCG, GFF, IG Stanford, MSF, NBRF, NEXUS, PIR, PHYLIP, Pretty, Stanford, and XML.
To access ReadSeq with Windows
ReadSeq is available from a web site at the University of Indiana.
You can also use readseq directly at the EBI analysis tools webpage.
Instructions for running ReadSeq at the Woods Hole workshop
To run the program from a UNIX shell type:
readseq
Follow the prompts to specify the input file, output file, and format type. For help, type
?
to bring up a description of available options (including file formats).
It is easy to run ReadSeq from a single command line. Simply type
readseq -option infile > outfile
For example, to convert a nexus file to FASTA format, type
readseq -a -f8 infile > outfile
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