Marine Biological Laboratory Workshop on Molecular Evolution  
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P

Page, R. D. M. and E. C. Holmes. 1998. Molecular Evolution: A Phylogenetic Approach. Blackwell Science, Oxford.

Pagel, M. 1999. The maximum likelihood approach to reconstructing ancestral states of discrete characters on phylogenies. Syst. Biol. 48:612-622.

Pagel, M. and A. Meade. 2004. A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data. Syst. Biol. 53:571-581.

Pagel, M., A. Meade, and D. Barker 2004. Bayesian estimation of ancestral character states on phylogenies. Syst. Biol. 53:673-684.

Pamilo, P. and N. O. Bianchi. 1993. Evolution of the Zfx and Zfy genes: rates and interdependence between the genes. Mol. Bio. Evol. 10:271-281.

Paterson S, K. Wilson, and J. M. Pemberton. 1998. Major histocompatibility complex variation associated with juvenile survival and parasite resistance in a large unmanaged ungulate population. Proc. Natl. Acad. Sci USA 95:3714-3719.

Paulsen IT, Banerjei L, Myers GSA, et al. (2003) Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis. Science 299: 2071-2074.

Papadopoulos,D., D. Schneider, J. Meier-Eiss, W. Arber, R. E. Lenski, and M. Blot. 1999. Genomic evolution during a 10,000-generation experiment with bacteria. Proc. Natl. Acad. Sci. USA 96:3807-3812.

Penny, D. and M. D. Hendy. 1985. Testing methods of evolutionary tree construction. Cladistics 1:266-278.

Perler F, A. Efstratiadis, P. Lomedico, W. Gilbert R. Kolodner, and J. Dodgson. 1980. The evolution of genes: the chicken preproinsulin gene. Cell. 20:555-566.

Peterson SN and Fraser CM (2001) The complexity of simplicity. Genome Biol. 2: 1-7.

Peterson SN, Bailey C, Jensen JS et al. (1995) Characterization of repetitive DNA in the Mycoplasma genitalium genome: possible role in the generation f antigenic variation. Proc. Natl. Acad. USA 92: 11829-11833.

Peterson-Burch, B. D., D. A. Wright, H. M. Laten, and D. F. Voytas. 2000. Retroviruses in plants? Trends Genet. 16:151-152.

Pizza M, Scarlato V, Masignani V et al. (2000) Identification of vaccine candidates against serogroup B meningococcus by whole-genome sequencing. Science 287: 1816- 1820.

Plushnikov, Anna., P. Donnelly, Optimal Sequencing Stategies for Surveying Molecular Genetic Diveristy Genetics. 144:1244-1262.

Pollock, D. D., J. A. Eisen, N. A. Doggett and M. P. Cummings. 2000. A case for evolutionary genomics and the comprehensive examination of sequence biodiversity. Mol. Biol. Evol. 17:1776-1788.

Pond SL, Frost SD. 2005. A genetic algorithm approach to detecting lineage-specific variation in selection pressure. Mol Biol Evol. 2005 Mar;22(3):478-85.

Poranen, M. M. and R. Tuma. 2004. Self-assembly of double-stranded RNA bacteriophages. Virus Res. 101:93-100.

Potts W. K., C.J. Manning, and E. D. Wakeland. 1991. Mating patterns in seminatural populations of mice influenced by MHC genotype. Nature 352:619-21.

Posada, D. and T. R. Buckley. 2004. Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst. Biol. 53:793-808.

Posada, D. and K. A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:917-818. Modeltest |

Posada, D. and K. A. Crandall. 2001. Selecting the best-fit model of nucleotide substitution. Syst. Biol. 50:580-601.

Prager E. M. and A. C. Wilson.1988. Ancient origin of lactalbumin from lysozyme: analysis of DNA and amino acid sequences. J. Mol. Evol. 27:326-335.

Pritchard, J. K., Stephens, M., and Donnelly, P. 2000. Inference of population structure using multilocus genotypic data. Genetics 155:945-959.

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Maintained by Adam Bazinet
Direct questions and comments to Michael Cummings
Maintained by Adam Bazinet
Direct questions and comments to Michael Cummings