| C |
 |
|
Capy, P., D. Anxolabehere, and
T. Langin. 1994. The strange phylogenies of transposable elements:
are horizontal transfers the only explanation? Trends
Genet. 10:7-12.
Carrington, M., G. W. Nelson,
M. P. Martin, T. Kissner, D. Vlahov, J. J. Goedert, R. Kaslow,
S. Buchbinder, K. Hoots and S. J. O'Brien. 1999. HLA and HIV-1:
heterozygote advantage and B*35-Cw*04 disadvantage. Science
283:1748-1752.
Carroll, S., J. Grenier and
S. Weatherbee. 2001. From DNA to Diversity. Sinauer Associates,
Sunderland, Massachusetts.
Cavalli-Sforza, L. L. and
A. W. F. Edwards. 1967. Phylogenetic analysis: Models and estimation
procedures. Evolution 21:550-570. 
Cavender, J. A. 1978. Taxonomy with
confidence. Mathematical Biosciences 40:271-280.
Chang, B. S. W. and M. J. Donoghue.
2000. Recreating ancestral proteins. Trends
Ecol. Evol. 15:109-114.
Chao L, Tran TT, Tran TT. 1997. The advantage of sex in the RNA virus phi6. Genetics. 147(3):953-9.
Church S., Livingstone K., Lai Z., Kozik A., Knapp S., Michelmore R. and Rieseberg L. 2007. Using Variable Rate Models to Identify Genes Under Selection in Sequence Pairs: Their Validity and Limitations for EST Sequences. J Mol Evol. 64:171-180.
Churchill, G. A. 1989. Stochastic
models for heterogeneous DNA sequences. B. Math. Biol.
51:79-94.
Cibois, A., Slikas B, Schulenberg, T. S. and Pasquet, E. 2001. An endemic radiation of Malagasy songbirds revealed by mitochondrial sequence data. Evolution 55:1198-1206.
Clark, J. B. and
M. G. Kidwell. 1997. A phylogenetic perspective on P transposable
element evolution in Drosophila. Proc. Natl. Acad. Sci. USA
94:11428-11433.
Clarke B. 1975. The contribution of ecological genetics to evolutionary theory: detecting the direct effects of natural selection on particular polymorphic loci. Genetics. 79 Suppl:101-13
Collins, J. F., Coulson A. F. W. and Lyall A. 1988. The significance of protein sequence similarities. CABIOS 4(1):67-71.
Comeron, J. M. 1995. A method for estimating the numbers of synonymous and nonsynonymous substitutions
per site. J. Mol. Evol. 41:1152-1159.
Cooper, A. and D. Penny. 1997.
Mass survival of birds across the Cretaceous-Tertiary
boundary: Molecular evidence. Science 275:1109-1113.
Copenhaver, G. P., K. Nickel,
T. Kuromori, M. I. Benito, S. Kaul, X. Lin, M. Bevan, G. Murphy,
B. Harris, L. D. Parnell, W. R. McCombie, R. A. Martienssen, M. Marra,
and D. Preuss. 1999. Genetic definition and sequence analysis of
Arabidopsis centromeres. Science 286:2468-2474.
Corces, V. G. and
P. K. Geyer. 1991. Interactions of retrotransposons with the host
genome: the case the gypsy element of Drosophila. Trends
Genet. 7:86-90.
Cracraft, J. 1986. Origin and evolution of continental biotas: speciation and historical congruence within the Australian avifauna. Evolution 40:977-996.
Craig, N., R. Craigie, M. Gellert and A. Lambowitz. 2002. Mobile DNA II. American Society for Microbiology. Washington DC.
Cummings, M. P. 1994. Transmission
patterns of eukaryotic transposable elements: arguments for and
against horizontal transfer. Trends Ecol. Evol. 9:141-145.
Cummings, M. P., S. P. Otto and
J. Wakeley. 1995. Sampling properties of DNA sequence data in
phylogenetic analysis. Mol. Biol. Evol. 12:814-822.
Cummings, M. P., S. P. Otto and
J. Wakeley. 1999. Genes and other samples of DNA sequence data
for phylogenetic inference. Biol. Bull. 196:532-540.
Cummings, M. P., S. A. Handley, D. S. Myers, D. L. Reed, A. Rokas,
K. Winka. 2003. Comparing bootstrap and posterior probability
values in the four-taxon case. Syst Biol. 52:477-487.
Cunningham, C. W. 1999. Some
limitations of ancestral character-state reconstruction when testing
evolutionary hypotheses. Syst. Biol. 48:665-674.
Cunningham, C. W., K. E. Omland,
and T. H. Oakley. 1998. Reconstructing ancestral character states:
a critical reappraisal. Trends Ecol. Evol. 13:361-366.
|
