Marine Biological Laboratory Workshop on Molecular Evolution  
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A

Abascal, F., R. Zardoya, and D. Posada. 2005. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21: 2104-2105.

Ackermann, M., S. C. Stearns, U. Jenal. 2003. Senescence in a bacterium with asymmetric division. Science 300:1920.

Adachi, J. and M. Hasegawa. 1995. MOLPHY: Programs for Molecular Phylogenetics Ver. 2.3. Institute of Statistical Mathematics, Tokyo.

Adachi, J. and M. Hasegawa. 1996. Model of amino acid substitution in proteins encoded by mitochondrial DNA. J. Mol. Evol. 42:459-468.

Aguileta G, Bielawski JP, Yang Z. 2004. Gene conversion and functional divergence in the beta-globin gene family. J Mol Evol. 59:177-189.

Agrawal, A., Q. M. Eastman, and D. G. Schatz. 1998. Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune system. Nature. 394:744-751.

Akaike, H. 1974. A new look at the statistical model identification. IEEE Trans. Autom. Contr. 19:716-723.

Akashi H. 1995. Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.

Alfaro M. E. and Holder M. T. 2006. The Posterior and Prior in Bayesian Phylogenetics. Annu. Rev. Ecol. Evol. Syst. 37:19-42

Alfaro M. E., S. Zoller and F. Lutzoni. 2003. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol. Biol. Evol. 20(2):255-266.

Altschul S. F., M. S. Boguski, W. Gish and J. C. Wootton. 1994. Issues in searching molecular sequence databases. Nature Genet. 6:119-129.

Andolfatto P. 2005. Adaptive evolution of non-coding DNA in Drosophila. Nature 437(7062):1149-52

Andreone F, Vences M, Vieites DR, Glaw F, Meyer A. 2005. Recurrent ecological adaptations revealed through a molecular analysis of the secretive cophyline frogs of Madagascar.Mol Phylogenet Evol. 34(2):315-22.

Anisimova, M., J. P. Bielawski, and Z. Yang. 2001. Accuracy and power of likelihood ratio test to detect adaptive molecular evolution. Molecular Biology and Evolution. 18(8):1585-1592.

Anisimova, M., J. P. Bielawski and Z. Yang. 2002. Accuracy and power of Bayes prediction of amino acid sites under positive selection. Mol. Biol. Evol. 19:950-958.

Anisimova, M., and Gascuel O. 2006. Approximate Likelihood-Ratio Test for Branches: A Fast Accurate and Powerful Alternative Syst Bio 55:4 539-552.

Anisimova, M., R. Nielsen, and Z. Yang. 2003. Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. Genetics 164(3):1229-1236.

Arbogast, B. S., S. V. Edwards, J. Wakeley, P. Beerli and J. B. Slowinski. 2002. Estimating divergence times from molecular data on population genetic and phylogenetic time scales. Annual Review of Ecology and Systematics 33:707-740.

Atkins J. F. and Gesteland R. F. 2001. mRNA readout at 40. Nature 414, 693

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Maintained by Adam Bazinet
Direct questions and comments to Michael Cummings
Maintained by Adam Bazinet
Direct questions and comments to Michael Cummings