| T-Coffee |
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T-Coffee (Tree based Consistency Objective Function For Alignment Evaluation) is a tool for multiple sequence alignment (Notredame et al. 2000). T-Coffee can combine separate alignments generated within T-Coffee or from other alignment software into a single alignment. This program also gives a consistency score for each position of a combined alignment which can indicate the accuracy of the new alignment.
Version 5.72
Input data file format
FASTA
Instructions
To run T-Coffee from a UNIX shell type:
t_coffee input > output
at the command prompt of the terminal window.
A T-Coffee tutorial is available. Another tutorial is also available from Steve Thompson.
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