| F |
 |
 |
Farris, J. S. 1970. Methods for
computing Wagner Trees. Syst. Zool. 19:83-92.
Farris, J. S., V. A. Albert,
M. Kallersjöo, D. Lipscomb, and A. G. Kluge. 1996. Parsimony
jackknifing outperforms neighbor-joining. Cladistics 12:99-124.
Fay JC, Wyckoff GJ, Wu CI. 2002. Testing the neutral theory of molecular evolution with genomic data from Drosophila. 28;415(6875):1024-6.
Felsenstein, J. 1973. Maximum-likelihood and minimum-steps methods for estimating evolutionary trees from data on discrete characters. Systematic Zoology, 22:240-249.
Felsenstein, J. 1978. Cases in which Parsimony of Compatibility Methods Will be Positively Misleading. Systematic Zoology, 27:401-410.
Felsenstein, J. 1981. Evolutionary
trees from DNA sequences: a maximum likelihood
approach. J. Mol. Evol., 17:368-376.
Felsenstein, J. 1983a. Inferring evolutionary trees from DNA sequences. pp 133-150 in Statistical Analysis of DNA Sequence Data, Weir, B. S. and Dekker, M. (eds.). New York.
Felsenstein, J. 1983b. Methods for inferring phylogenies: a statistical view. pp 315 in Numerical Taxonomy, Felsenstein, J. (ed.). Berlin.
Felsenstein, J. 1983c. Parsimony in systematics: biological and statistical issues. Ann. Rev. Ecol. Syst. 14:313-333.
Felsenstein, J. 1984. Distance methods
for inferring phylogenies: a justification. Evolution 38:16-24.
Felsenstein,
J. 1985a. Confidence limits on phylogenies: an approach using the
bootstrap. Evolution 39:783-791.
Felsenstein, J. 1985b. Confidence
limits on phylogenies with a molecular clock.
Syst. Zool. 34:152-161.
Felsenstein, J. 1988a. Phylogenies
and quantitative characters. Ann. Rev. Ecol. Syst. 19:445-471.
Felsenstein, J. 1988b. Phylogenies
from molecular sequences: inference and reliability.
Ann. Rev. Gen. 22:521-565.
Felsenstein, J. 2004. Inferring Phylogenies. Sinauer Associates, Sunderland, Massachusetts.
Felsenstein, J. and H. Kishino.
1993. Is there something wrong with the bootstrap on phylogenies?
A reply to Hillis and Bull. Syst. Biol. 42:193-200.
Felsenstein, J. and
G. A. Churchill. 1996. A Hidden Markov Model approach to variation
among sites in rate of evolution. Mol. Biol. Evol. 13:93-104.
Felsenstein, J., M. K. Kuhner, J.
Yamato, and P. Beerli. 1999. Likelihoods on coalescents: a Monte
Carlo sampling approach to inferring parameters from population
samples of molecular data. In "Statistics in Genetics and Molecular
Biology", ed. F. Seillier. IMS Lecture Notes-Monograph Series, volume
33. LAMARC
Feng, D. F., and
R. F. Doolittle. 1987. Progressive sequence alignment as a
prerequisite to correct phylogenetic
trees. J. Mol. Evol. 25:351-360.
Feschotte, C., N. Jiang and
S. R. Wessler. 2002. Plant transposable elements: where genetics meets genomics. Nat. Rev. Genet. 3:329-341.
Fisher, R. A. 1922. On the mathematical
foundations of theoretical statistics. Philos. Trans. R. Soc. Lond. A
222:309-368.
Fitch, W. M. 1967. Evidence suggesting a non-random character to nucleotide replacements in naturally occurring mutations. J. Mol. Biol. 26:499-507.
Fitch, W. M. 1971. Toward defining the
course of evolution: Minimal change for a specific tree
topology. Syst. Zool. 20:406-416.
Fitch, W. M. 2000. Homology, a personal veiw on some of the problems. Trends Genet. 16:227-231.
Fitch, W. M. and W. R. Atchley. 1985. Evolution in inbred strains of mice appears rapid. Science 228:1169-1175.
Fitch, W. M., and E. Margoliash. 1967. A method for estimating the number of invariant amino acid coding positions in a gene using cytochrome c as a model case. Biochem. Genet. 1:65-71.
Fitch, W. and E. Markowitz. 1970. An
improved method for determining codon variability in a gene and its
application to the rate of fixation of mutations in evolution.
Biochem. Genet. 4:579-593
Fraser, C. M., J. R. Eisen, and
S. L.Salzberg. 2000. Microbial genome sequencing. Nature
406:799-803.
Froissart R, Wilke CO, Montville R, Remold SK, Chao L, Turner PE. 2004. Co-infection weakens selection against epistatic mutations in RNA viruses. Genetics. 168(1):9-19.
Frumhoff, P. C. and
H. K. Reeve. 1994. Using phylogenies to test hypotheses of
adaptation: a critique of some current proposals. Evolution
48:172-180.
Fry, A. J., M. R. Palmer and D. M. Rand. 2004. Variable fitness effects of Wolbachia infection
in Drosophila melanogaster. Heredity 93:379-389.
Fu, Y.-X. and Li, W.H 1993. Statistical tests of neutrality of mutations. Genetics 133:693-709.
Fu, Y.-X. 1994. A phylogenetic estimator of effective population size or mutation rate. Genetics 136:685-692.
Fu, Y.-X. 1996. New statistical tests of neutrality for DNA samples from a population. Genetics 143:557-70.
Fu, Y.-X. 1997.Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915-25.
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