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F

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Farris, J. S., V. A. Albert, M. Kallersjöo, D. Lipscomb, and A. G. Kluge. 1996. Parsimony jackknifing outperforms neighbor-joining. Cladistics 12:99-124.

Fay JC, Wyckoff GJ, Wu CI. 2002. Testing the neutral theory of molecular evolution with genomic data from Drosophila. 28;415(6875):1024-6.

Felsenstein, J. 1973. Maximum-likelihood and minimum-steps methods for estimating evolutionary trees from data on discrete characters. Systematic Zoology, 22:240-249.

Felsenstein, J. 1978. Cases in which Parsimony of Compatibility Methods Will be Positively Misleading. Systematic Zoology, 27:401-410.

Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol., 17:368-376.

Felsenstein, J. 1983a. Inferring evolutionary trees from DNA sequences. pp 133-150 in Statistical Analysis of DNA Sequence Data, Weir, B. S. and Dekker, M. (eds.). New York.

Felsenstein, J. 1983b. Methods for inferring phylogenies: a statistical view. pp 315 in Numerical Taxonomy, Felsenstein, J. (ed.). Berlin.

Felsenstein, J. 1983c. Parsimony in systematics: biological and statistical issues. Ann. Rev. Ecol. Syst. 14:313-333.

Felsenstein, J. 1984. Distance methods for inferring phylogenies: a justification. Evolution 38:16-24.

Felsenstein, J. 1985a. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.

Felsenstein, J. 1985b. Confidence limits on phylogenies with a molecular clock. Syst. Zool. 34:152-161.

Felsenstein, J. 1988a. Phylogenies and quantitative characters. Ann. Rev. Ecol. Syst. 19:445-471.

Felsenstein, J. 1988b. Phylogenies from molecular sequences: inference and reliability. Ann. Rev. Gen. 22:521-565.

Felsenstein, J. 2004. Inferring Phylogenies. Sinauer Associates, Sunderland, Massachusetts.

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Fitch, W. M. and W. R. Atchley. 1985. Evolution in inbred strains of mice appears rapid. Science 228:1169-1175.

Fitch, W. M., and E. Margoliash. 1967. A method for estimating the number of invariant amino acid coding positions in a gene using cytochrome c as a model case. Biochem. Genet. 1:65-71.

Fitch, W. and E. Markowitz. 1970. An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution. Biochem. Genet. 4:579-593

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Fu, Y.-X. 1994. A phylogenetic estimator of effective population size or mutation rate. Genetics 136:685-692.

Fu, Y.-X. 1996. New statistical tests of neutrality for DNA samples from a population. Genetics 143:557-70.

Fu, Y.-X. 1997.Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915-25.

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