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| Converting File Formats |
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Having the proper data file format is essential as many programs can only input certain file types. This page serves as a reference for file formats that can be inputted and outputted for several of the software programs used in the workshop.
CLUSTAL file format:
Programs that input this file type: Clustal W/X
Programs that output this file type: Clustal W/X, T-Coffee
FASTA file
format:
Programs that input this file type: Clustal W/X, GCG (SeqLab), MAFFT, T-Coffee
Programs that output this file type: Clustal W/X, GCG (SeqLab), MAFFT, T-Coffee
GCG-MSF file
format:
Programs that input this file type: Clustal W/X, GCG (SeqLab)
Programs that output this file type: Clustal W/X, GCG (SeqLab), T-Coffee
NEXUS file
format:
Programs that input this file type: BEAUti, GARLI, Modeltest, MrBayes, PAUP*
Programs that output this file type: Clustal W/X, GCG,PAUP*
PHYLIP file
format:
Programs that input this file type: GARLI, Lamarc, Migrate-n, PAML, PHYLIP
Programs that output this file type: Clustal W/X, PAUP*, PHYLIP
PIR file
format:
Programs that input this file type: Clustal W/X, GCG (SeqLab)
Programs that output this file type: Clustal W/X, GCG (SeqLab), T-Coffee
FILE CONVERSION PROGRAMS
ReadSeq can convert all of the above data file types.
DataConvert 1.0 can convert CLUSTAL, FASTA, MEGA, NEXUS, and PHYLIP data file types for both Macintosh and Windows platforms.
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